miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|88205483|gb|CI205332.1|CI205332 GTCGGGGACAGAGCTGGAGGCGCTGCCGGCGACGTTCGACACAAGGGAATACTACCAGCCGGCGCCGCCGGTGAGCATGC
TGGCCGCCGCGGCGGCGGCGGCGGCGGCGCAGTACTCGTCGGACCACCACCAGACTGCTCTCCACCTCGGCTACTTCAAG
GTCGACTCCGGCAAAGGCGGCCTCCTCTAGATCGATCGCCATGGATGCAAATATTGCATGCATTCGATCGAATTATACTG
TATTCCGTAAGAGCGACGACGATGAAGATGACAATAATTATTGTGGTATTGTACGTATAGTACGCTGGTAGACCTACGTA
TACGTATACGTATGTATGATGAAGAATAAGGTGGTGTTTGGTTGGAGGGGCTAAAGTGGGGCTAAACTTTAGTTCCTCTC
ACAAAAATATAAGTTCCTATTATAGAGACTTATATTTTTGTGAGAGAGACTAAATTTAGTCCTAGTTCCCAAACACCCCT
AATATACATTTGTGGTGTGC




Most similar to sp|Q8RU31|MAD21_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8RU31|MAD21_ORYSJ MADS-box transcription factor 21 OS=Oryza
           sativa subsp. japonica GN=MADS21 PE=2 SV=1
          Length = 265

 Score =  109 bits (273), Expect = 8e-24
 Identities = 53/62 (85%), Positives = 53/62 (85%)
 Frame = +2

Query: 2   SGTELEALPATFDTREYYQPAPPVSMLXXXXXXXXXQYSSDHHQTALHLGYFKVDSGKGG 181
           SGTELEALPATFDTREYYQPAPPVSML         QYSSDHHQTALHLGYFKVDSGKGG
Sbjct: 204 SGTELEALPATFDTREYYQPAPPVSMLAAAAAAAAAQYSSDHHQTALHLGYFKVDSGKGG 263

Query: 182 LL 187
           LL
Sbjct: 264 LL 265